ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR444
source: miRBase, original name: bdi-MIR444 (MI0011558)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTGCCTCAAGCTTGCTGC miRNA* GTCCGACTAGAGGCAGCAACT mismatches: 2 bulges: 2 |
pre-miRNA
CACGCGTCCGACTAGAGGCAGCAACTCCATAACTTGCGGAAAGCTTGTTGGATGATGACCATGCCAATGATTTTACCGAAGTTATGCAGTTGCTGCCTCA
AGCTTGCTGC
dot-bracket secondary structure
...(((..(((((.((((((((((((.((((((((.(((.(((.(..(((((((.....))).))))..).))).))))))))))).)))))))))))).
)).))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: qRT-PCR
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
CACGCGTCCGACTAGAGGCAGCAACTCCATAACTTGCGGAAAGCTTGTTGGATGATGACCATGCCAATGATTTTACCGAAGTTATGCAGTTGCTGCCTCA
AGCTTGCTGC
dot-bracket secondary structure
...(((..(((((.((((((((((((.((((((((.(((.(((.(..(((((((.....))).))))..).))).))))))))))).)))))))))))).
)).))).)))
SIMILARITIES| miRBase osa-MIR444e: 1e-25 PMRD bdi-miR444: 6e-58 microPC miR444: 0.000000006 | UniProt no hits RFAM MIR444: 0.0000000000004 |
Identical with: bdi-miR444 from PMRD (MNEST048319) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: qRT-PCR
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
