ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1122
source: miRBase, original name: bdi-MIR1122 (MI0011568)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCGTATTTGGA miRNA* mismatches: 4 bulges: 131 |
pre-miRNA
TCGTCCATGTATCCATATTTCATTGCCGAAATATTACATGTGTATCTAGACGTTTTTTACACATAGATACATCCGTATTTGGACAAATTTGAGACGAGTA
ATAGAGATCGGATGGAGTACAATTTTTTCCCCTTCTTATCTGGTCACCACATACACAAATTTGCACAGAACTGAACCACG
dot-bracket secondary structure
.....((((((...(((((((......))))))))))))).(((((((...((.....))...))))))).((.((.((((..((((((((...(.....
...).((((((((((((.........)))).......))))))))..........))))))))..)))))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
TCGTCCATGTATCCATATTTCATTGCCGAAATATTACATGTGTATCTAGACGTTTTTTACACATAGATACATCCGTATTTGGACAAATTTGAGACGAGTA
ATAGAGATCGGATGGAGTACAATTTTTTCCCCTTCTTATCTGGTCACCACATACACAAATTTGCACAGAACTGAACCACG
dot-bracket secondary structure
.....((((((...(((((((......))))))))))))).(((((((...((.....))...))))))).((.((.((((..((((((((...(.....
...).((((((((((((.........)))).......))))))))..........))))))))..)))))).))......
SIMILARITIES| miRBase bdi-MIR1135: 2e-19 PMRD bdi-miR1122: 2e-99 microPC no hits | UniProt no hits RFAM MIR1122: 1e-20 |
Identical with: bdi-miR1122 from PMRD (MNEST048320) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
