ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1878
source: miRBase, original name: bdi-MIR1878 (MI0017956)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTGTAGTGTTCAGATTGAGTTT miRNA* ACTTAGTCTGAACACTATAAAAAA mismatches: 1 bulges: 0 |
pre-miRNA
TCACTATTGCAAACTTAGTCTGAACACTATAAAAAATGCTCATGTAAAAATATGCGCATCATAGATTTGTAGTGTTCAGATTGAGTTTACAGTAGTTG
dot-bracket secondary structure
..(((((((.(((((((((((((((((((((((..((((.(((((....))))).))))......))))))))))))))))))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
TCACTATTGCAAACTTAGTCTGAACACTATAAAAAATGCTCATGTAAAAATATGCGCATCATAGATTTGTAGTGTTCAGATTGAGTTTACAGTAGTTG
dot-bracket secondary structure
..(((((((.(((((((((((((((((((((((..((((.(((((....))))).))))......))))))))))))))))))))))).)))))))..
SIMILARITIES| miRBase osa-MIR1878: 0.000000000005 PMRD osa-miR1878: 0.000000000005 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
