ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5055 (MI0017944)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCGCTGCTGAGCTCGGCGT miRNA* GTTCGATATCGCCAGCAGGGC mismatches: 3 bulges: 2 |
pre-miRNA
GGTTACAAGCTCTCGCTGCTGAGCTCGGCGTTGCGTTGCAAGGAGCAGAGTATTTAACCTGCGCCGACAGTTGTTAAACAGGCAAGGTGGGACTAAAAAG
GGTGTCGCCTACTGTACTGGCTGGCGATGGCAACTGGGCTGTGTGGCGCACCGCAGCTGGGCCGTTGGCATACTGGACTTGCCTGTTTATAAAACTGGGC
ACGGGTCAAAACGTTCGATATCGCCAGCAGGGCCATTGTTT
dot-bracket secondary structure
....(((((((((.((((.(((..((((((((((.((((.....)))).)).....(((((.(((..(((((..(((((((((.((((((.(((......
))).))))))...((.(..(.((.(((((((...(.(((((((.(.....)))))))).)))))))).))..)..)))..)))))))))...))))))))
.)))))...)))).))))..))).)))))))))..))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
GGTTACAAGCTCTCGCTGCTGAGCTCGGCGTTGCGTTGCAAGGAGCAGAGTATTTAACCTGCGCCGACAGTTGTTAAACAGGCAAGGTGGGACTAAAAAG
GGTGTCGCCTACTGTACTGGCTGGCGATGGCAACTGGGCTGTGTGGCGCACCGCAGCTGGGCCGTTGGCATACTGGACTTGCCTGTTTATAAAACTGGGC
ACGGGTCAAAACGTTCGATATCGCCAGCAGGGCCATTGTTT
dot-bracket secondary structure
....(((((((((.((((.(((..((((((((((.((((.....)))).)).....(((((.(((..(((((..(((((((((.((((((.(((......
))).))))))...((.(..(.((.(((((((...(.(((((((.(.....)))))))).)))))))).))..)..)))..)))))))))...))))))))
.)))))...)))).))))..))).)))))))))..))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM Plant_SRP: 0.00001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
