ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5060 (MI0017953)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGCTAGCTAGAGACCGCCAA miRNA* GGCGGTGCTGGAACTGGCCGGG mismatches: 3 bulges: 3 |
pre-miRNA
GGTGGCACCGAGGCGGTGCTGGAACTGGCCGGGCGGTGGGACGGGCGGGAACTGGAACTGCGGCGGCAAGGTAAGATCTATGCGGCAGCAGGTTTGGGGG
GTGGAAGTCGCCGGTGAGAGGAGTGGTTCCGGGCGGCGGGTGAGGAGCTCCCAAGGTGCACAAATCTATATGAGTTGAGTTGTGTATCGGGACGGATGAA
AAACCTGCCAAGTATTTTCGATCTTCTTGTTCTGCATCTCTCCTTATTAGTGTCGACGAAAACCTGCCAAGTATGTCAACCGCCCGGCTAGCTAGAGACC
GCCAATGTCGCTTC
dot-bracket secondary structure
(((((((....((((((.((((..(((((((((((((..((((.((...........((((.((.(((.((......)).))).)).))))..((((.((
((....((((.((.(((((((((.(((.(.(((((((((((.......((((..(((((((((.((..........)).)))))))))))))........
..)))))))..(......).........)))).).))).)))))).))).)).))))....)))).)))))).)))).)))))))))))))))))..)))
)))..)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
GGTGGCACCGAGGCGGTGCTGGAACTGGCCGGGCGGTGGGACGGGCGGGAACTGGAACTGCGGCGGCAAGGTAAGATCTATGCGGCAGCAGGTTTGGGGG
GTGGAAGTCGCCGGTGAGAGGAGTGGTTCCGGGCGGCGGGTGAGGAGCTCCCAAGGTGCACAAATCTATATGAGTTGAGTTGTGTATCGGGACGGATGAA
AAACCTGCCAAGTATTTTCGATCTTCTTGTTCTGCATCTCTCCTTATTAGTGTCGACGAAAACCTGCCAAGTATGTCAACCGCCCGGCTAGCTAGAGACC
GCCAATGTCGCTTC
dot-bracket secondary structure
(((((((....((((((.((((..(((((((((((((..((((.((...........((((.((.(((.((......)).))).)).))))..((((.((
((....((((.((.(((((((((.(((.(.(((((((((((.......((((..(((((((((.((..........)).)))))))))))))........
..)))))))..(......).........)))).).))).)))))).))).)).))))....)))).)))))).)))).)))))))))))))))))..)))
)))..)))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
