ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR5062
source: miRBase, original name: bdi-MIR5062b (MI0017960)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAACCTTGGGGAAAAGCCGCCT miRNA* GCGGATTTTTCACTAAGGTTCATG mismatches: 1 bulges: 1 |
pre-miRNA
CGTAGCATGGTGAACCTTGGGGAAAAGCCGCCTAACATGATTAAATTGTATTTTGTTCTACTATTCCAAAATTGTTGTGGTACAATATAAGGTGCAGAGT
AAAGTTTAACATGTTAGGCGGATTTTTCACTAAGGTTCATGTGGTTATC
dot-bracket secondary structure
.(((((...(((((((((((.((((((((((((((((((.(((((((.((((((((.(((((((..((....))..))))).........)).)))))))
).))))))))))))))))))).)))))).)))))))))))...))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
CGTAGCATGGTGAACCTTGGGGAAAAGCCGCCTAACATGATTAAATTGTATTTTGTTCTACTATTCCAAAATTGTTGTGGTACAATATAAGGTGCAGAGT
AAAGTTTAACATGTTAGGCGGATTTTTCACTAAGGTTCATGTGGTTATC
dot-bracket secondary structure
.(((((...(((((((((((.((((((((((((((((((.(((((((.((((((((.(((((((..((....))..))))).........)).)))))))
).))))))))))))))))))).)))))).)))))))))))...))))).
SIMILARITIES| miRBase bdi-MIR5062a: 5e-81 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: bdi-MIR5062a from miRBase (MNEST041822) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
