ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5064 (MI0017962)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAATTTGTCCATAGCATCAG miRNA* GATGCCATGGCTTCAAGTACACC mismatches: 4 bulges: 2 |
pre-miRNA
TCAACGCCAGCTGATGCCATGGCTTCAAGTACACCGAATGCTTTCTCCATCTTGCCGACTAAGCCATATCCATCAATCAGTGAATTAAATGTAATAACGT
TGGGTCTTTCACCTATATGTATAACCAAGTCAAAGATATCCTGTGCATCCACAACTCTTCCTTCTTTGCATAGACTGTTTATTATTGAACTGAAGAACGC
AATGTTAGGACAAGGAATGCCTCTGCTCATCATTTCAGAAACCAACTCCTTCGCTTTAACCAAATTACCATACATACAAAACCGCTGAATAAGGGAGTGA
TAAACAATTCCGTTCGGTTTTAGTCCCATAGCAATCATCTGGTCGAATTTGTCCATAGCATCAGCCAGCCGACC
dot-bracket secondary structure
.....((..((((((((.((((...(((((.(((((.(((...........((((.(((((((((...........((((((.......(((..((((((
((.((..(((..............................(((((((...................)))))))...(((((....))))).)))..)).)
)))))))..))).(((.((..((((..........))))...))..))).................................)))))).....(((((..
......)))))....)).))))))).....)))).))).)))).).))))).)))).))))))))..)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
TCAACGCCAGCTGATGCCATGGCTTCAAGTACACCGAATGCTTTCTCCATCTTGCCGACTAAGCCATATCCATCAATCAGTGAATTAAATGTAATAACGT
TGGGTCTTTCACCTATATGTATAACCAAGTCAAAGATATCCTGTGCATCCACAACTCTTCCTTCTTTGCATAGACTGTTTATTATTGAACTGAAGAACGC
AATGTTAGGACAAGGAATGCCTCTGCTCATCATTTCAGAAACCAACTCCTTCGCTTTAACCAAATTACCATACATACAAAACCGCTGAATAAGGGAGTGA
TAAACAATTCCGTTCGGTTTTAGTCCCATAGCAATCATCTGGTCGAATTTGTCCATAGCATCAGCCAGCCGACC
dot-bracket secondary structure
.....((..((((((((.((((...(((((.(((((.(((...........((((.(((((((((...........((((((.......(((..((((((
((.((..(((..............................(((((((...................)))))))...(((((....))))).)))..)).)
)))))))..))).(((.((..((((..........))))...))..))).................................)))))).....(((((..
......)))))....)).))))))).....)))).))).)))).).))))).)))).))))))))..)).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q76C99|RF1_ORYSI: 1e-29 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
