ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5065 (MI0017963)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGCAATTCACTTATACACT miRNA* TGTTAGTGTAGTTCTCTGCC mismatches: 5 bulges: 3 |
pre-miRNA
TGAAAAAGGCTAGGCAATTCACTTATACACTATGATATTCAGAACTAGCAGTGTACAAGACAAATTGAATCGTGATTTAAATATGCAGTCCTATAAAATT
AGGACTAAATTGACACCCTAGAACTCTAGTTCTTTCTCGTTCCTTGTTTTGCTTCATCATTTTTGTTAGTGTAGTTCTCTGCCAGTTTCAT
dot-bracket secondary structure
(((((..(((.(((.((((((((...(((..((((((..((((((.((..((((.(((......((((((....))))))......(((((((......)
))))))...)))))))...(((((....))))).........)).))))))..).)))))...))).)))).)))).))))))..))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
TGAAAAAGGCTAGGCAATTCACTTATACACTATGATATTCAGAACTAGCAGTGTACAAGACAAATTGAATCGTGATTTAAATATGCAGTCCTATAAAATT
AGGACTAAATTGACACCCTAGAACTCTAGTTCTTTCTCGTTCCTTGTTTTGCTTCATCATTTTTGTTAGTGTAGTTCTCTGCCAGTTTCAT
dot-bracket secondary structure
(((((..(((.(((.((((((((...(((..((((((..((((((.((..((((.(((......((((((....))))))......(((((((......)
))))))...)))))))...(((((....))))).........)).))))))..).)))))...))).)))).)))).))))))..))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
