ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5169 (MI0018136)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGACCAAGTTTGTAGAACA miRNA* TTCTATAAACTTGGTCAAATT mismatches: 1 bulges: 0 |
pre-miRNA
TCCTTTTTATAAGATGTTCTAGCTTTGTCTCTTGAAGTTTGACCAAGTTTGTAGAACAGTATACTAATATCTAACAGTATCAAATAAGTATACTATGAAG
ATATATGCAATTGAGGATTTAATAAAACTAATTTAGAGTTGTAGATGTTGGTATATTTTTCTATAAACTTGGTCAAATTTAAAAAGTTTGAATTGGAACA
AAGCTAGAAC
dot-bracket secondary structure
...............((((((((((((((((((.((((((((((((((((((((((.((((((((((((((((......((((....(((((((....))
.)))))....))))...........((((.......)))).)))))))))))))))).))))))))))))))))))))))...)))........)).)))
))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
TCCTTTTTATAAGATGTTCTAGCTTTGTCTCTTGAAGTTTGACCAAGTTTGTAGAACAGTATACTAATATCTAACAGTATCAAATAAGTATACTATGAAG
ATATATGCAATTGAGGATTTAATAAAACTAATTTAGAGTTGTAGATGTTGGTATATTTTTCTATAAACTTGGTCAAATTTAAAAAGTTTGAATTGGAACA
AAGCTAGAAC
dot-bracket secondary structure
...............((((((((((((((((((.((((((((((((((((((((((.((((((((((((((((......((((....(((((((....))
.)))))....))))...........((((.......)))).)))))))))))))))).))))))))))))))))))))))...)))........)).)))
))))))))))
SIMILARITIES| miRBase sbi-MIR437b: 0.00000004 PMRD bdi-miR2504c: 2e-16 microPC miR437: 0.00004 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
