ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5172 (MI0018141)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATCTACTAGCTCCTCGGCA miRNA* CCGAGGAGCTAGTAGATCGGG mismatches: 0 bulges: 0 |
pre-miRNA
CCTCTTGACACTATGTACTCCAAATTCTTTTTGCCGAGGAGCTAGTAGATCGGGATGAAGTCAAGGATCAGGCAAAGAAGAACCCTTGAATTCAATCCTA
CCAAGGAGCTAGTATACGTCTTATTGCAGTGCTTGCAACGCCAAGCTTTTGATCCATCGGAATTTTTCCCCTTAGGTGCAGCGAGGGGAATTATGACTCA
TCAAGTAGGGGTTTTGCCTGTTTAGCAGTACCCTGCTTGGACGATTGATCTTCTTCGTCCGAGTCGTCATCGGGACGAGTATGTTCATCACCGACATTGT
TGAGATCAATGTCCGCGTCAGCCTCCTCGACTTCATCCTGATCTACTAGCTCCTCGGCAGAAAGAAATTCAAGTACATACTCTTACATT
dot-bracket secondary structure
...........((((((((..((.((((((((((((((((((((((((((((((((((((((..((((((.((((..((((..............((((.
...))))...........)))).))))...(((((......)))))...))))))...(((....((((((((.........))))))))...((((...
..((((((((...((((.......))))..))))))))((((.(((((((((..((((((((.......)).))))))..(((((.......)))))...
.)))))))))))))..))))...)))..)))))))))))))))))))))))))))))))))))))).))..))))))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
CCTCTTGACACTATGTACTCCAAATTCTTTTTGCCGAGGAGCTAGTAGATCGGGATGAAGTCAAGGATCAGGCAAAGAAGAACCCTTGAATTCAATCCTA
CCAAGGAGCTAGTATACGTCTTATTGCAGTGCTTGCAACGCCAAGCTTTTGATCCATCGGAATTTTTCCCCTTAGGTGCAGCGAGGGGAATTATGACTCA
TCAAGTAGGGGTTTTGCCTGTTTAGCAGTACCCTGCTTGGACGATTGATCTTCTTCGTCCGAGTCGTCATCGGGACGAGTATGTTCATCACCGACATTGT
TGAGATCAATGTCCGCGTCAGCCTCCTCGACTTCATCCTGATCTACTAGCTCCTCGGCAGAAAGAAATTCAAGTACATACTCTTACATT
dot-bracket secondary structure
...........((((((((..((.((((((((((((((((((((((((((((((((((((((..((((((.((((..((((..............((((.
...))))...........)))).))))...(((((......)))))...))))))...(((....((((((((.........))))))))...((((...
..((((((((...((((.......))))..))))))))((((.(((((((((..((((((((.......)).))))))..(((((.......)))))...
.)))))))))))))..))))...)))..)))))))))))))))))))))))))))))))))))))).))..))))))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
