ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR5067
source: miRBase, original name: bdi-MIR5175b (MI0018146)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTGTTCCTAAATTCTTGT miRNA* AAGAATTTAGGAATGGAGGGA mismatches: 0 bulges: 0 |
pre-miRNA
TCCAAGTTGGTGTTTGCGTGATTCAGAACTACTTCCTCTGTTCCTAAATTCTTGTCATTGTTTTAGTTCAAATTTGTATTAAAGCCACGACAAGAATTTA
GGAATGGAGGGAGTATGAGATATGCTACTCCCTTAGCTTTT
dot-bracket secondary structure
...(((((((.((..(((((.((((....(((((((((((((((((((((((((((...((((((((.((....)).))))))))...))))))))))))
))))))))))))))))))).))))).)).))...)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
TCCAAGTTGGTGTTTGCGTGATTCAGAACTACTTCCTCTGTTCCTAAATTCTTGTCATTGTTTTAGTTCAAATTTGTATTAAAGCCACGACAAGAATTTA
GGAATGGAGGGAGTATGAGATATGCTACTCCCTTAGCTTTT
dot-bracket secondary structure
...(((((((.((..(((((.((((....(((((((((((((((((((((((((((...((((((((.((....)).))))))))...))))))))))))
))))))))))))))))))).))))).)).))...)))))..
SIMILARITIES| miRBase bdi-MIR5175a: 8e-18 PMRD psa-miR1120: 0.00003 microPC no hits | UniProt no hits RFAM MIR1122: 0.0000000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
