ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5176 (MI0018145)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGCCATGTCGTCACATATC miRNA* TATGTGATGATGTGGCATAGA mismatches: 0 bulges: 0 |
pre-miRNA
AGTTTATTCTCTTTTCACACGTTCTCTCATTTATTCTATGCCATGTCGTCACATATCCTACATGGCAATATTTACCAACATGCTATGTAGGATATGTGAT
GATGTGGCATAGAATGCGAGGAGAGAGAGCAAACTTGTATGTGCAACA
dot-bracket secondary structure
(((((.((((((((((....(......)...((((((((((((((((((((((((((((((((((((.............))))))))))))))))))))
))))))))))))))))...)))))))))).))))).............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
AGTTTATTCTCTTTTCACACGTTCTCTCATTTATTCTATGCCATGTCGTCACATATCCTACATGGCAATATTTACCAACATGCTATGTAGGATATGTGAT
GATGTGGCATAGAATGCGAGGAGAGAGAGCAAACTTGTATGTGCAACA
dot-bracket secondary structure
(((((.((((((((((....(......)...((((((((((((((((((((((((((((((((((((.............))))))))))))))))))))
))))))))))))))))...)))))))))).))))).............
SIMILARITIES| miRBase bdi-MIR5176: 2e-80 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
