ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5179 (MI0018151)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGCTCAAGACCGCGCAAC miRNA* TGTGCGGTCTTGAGCAATAACG mismatches: 1 bulges: 1 |
pre-miRNA
GTTGCTCCTTCATCCCTAGATCTCTCATGTTTTGCTCAAGACCGCGCAACAGTTCCATATGACACCGCATCGCTGTCCTTGCCTATCATATATCTCATGA
AGTTCGACCAATGGATCTAAGGAAGAAGAAAAAGATTGCAAGCATGTGGATCATGTAAAGGATAGGTCTGAACGTCGATGCGCTGGTTATGGTCAGGCTG
TGCGGTCTTGAGCAATAACGTTGAGACGGATCTCTTATTCAAGATATTTAT
dot-bracket secondary structure
.......(((.......(((((((((((((((((((((((((((((((.(....(((((...((.(((((((.(((.(..(((((((........(((((
..(((..((...........))..)))........(..((....))..).))))).....)))))))..).))).))))))).))..)))))....).))
))))))))))))))).)))).)))))..))))).......)))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GTTGCTCCTTCATCCCTAGATCTCTCATGTTTTGCTCAAGACCGCGCAACAGTTCCATATGACACCGCATCGCTGTCCTTGCCTATCATATATCTCATGA
AGTTCGACCAATGGATCTAAGGAAGAAGAAAAAGATTGCAAGCATGTGGATCATGTAAAGGATAGGTCTGAACGTCGATGCGCTGGTTATGGTCAGGCTG
TGCGGTCTTGAGCAATAACGTTGAGACGGATCTCTTATTCAAGATATTTAT
dot-bracket secondary structure
.......(((.......(((((((((((((((((((((((((((((((.(....(((((...((.(((((((.(((.(..(((((((........(((((
..(((..((...........))..)))........(..((....))..).))))).....)))))))..).))).))))))).))..)))))....).))
))))))))))))))).)))).)))))..))))).......)))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
