ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR5067
source: miRBase, original name: bdi-MIR5180b (MI0018138)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGTGTCTCAGTTTTGAACT miRNA* TTCAAAACTGCGACACTTATT mismatches: 2 bulges: 0 |
pre-miRNA
GGCATACTTAATAGTTACTGCCTCCGATCCAAAATAAGTGTCTCAGTTTTGAACTAAGCCTAGTTCAAGCCTATTTCAAAACTGCGACACTTATTTTGGA
TCGGAGGTAGTATTAAAGTTCTTGAAGTTTGTACT
dot-bracket secondary structure
.(((.((((...((.(((((((((((((((((((((((((((.((((((((((.((.((.........)).)).)))))))))).)))))))))))))))
))))))))))))........))..)))).)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GGCATACTTAATAGTTACTGCCTCCGATCCAAAATAAGTGTCTCAGTTTTGAACTAAGCCTAGTTCAAGCCTATTTCAAAACTGCGACACTTATTTTGGA
TCGGAGGTAGTATTAAAGTTCTTGAAGTTTGTACT
dot-bracket secondary structure
.(((.((((...((.(((((((((((((((((((((((((((.((((((((((.((.((.........)).)).)))))))))).)))))))))))))))
))))))))))))........))..)))).)))...
SIMILARITIES| miRBase bdi-MIR5180a: 4e-38 PMRD no hits microPC miR1439: 0.00003 | UniProt no hits RFAM MIR1122: 1e-53 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
