ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR5185
source: miRBase, original name: bdi-MIR5185b (MI0018159)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTAGTTCATTTTTCAAATC miRNA* TTTGAGAATTGAACTAGAAGC mismatches: 1 bulges: 0 |
pre-miRNA
TTAGGGTTGTGTACTCACGCGAAAGTCCCGCTTCTAGTTCATTTTTCAAATCTTCTATTCAAAATTTTGCTCATAATTTGAATAAGAGGTTTGAGAATTG
AACTAGAAGCGGGACTTTTGCGGGATCCCGTTTGCACCCTTACTCACCAGCCC
dot-bracket secondary structure
...((((((.((..((.((((((((((((((((((((((((.(((((((((((..((((((((.............))))))))..))))))))))).))
)))))))))))))))))))))).))....(....)..........))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
TTAGGGTTGTGTACTCACGCGAAAGTCCCGCTTCTAGTTCATTTTTCAAATCTTCTATTCAAAATTTTGCTCATAATTTGAATAAGAGGTTTGAGAATTG
AACTAGAAGCGGGACTTTTGCGGGATCCCGTTTGCACCCTTACTCACCAGCCC
dot-bracket secondary structure
...((((((.((..((.((((((((((((((((((((((((.(((((((((((..((((((((.............))))))))..))))))))))).))
)))))))))))))))))))))).))....(....)..........))))))))
SIMILARITIES| miRBase bdi-MIR5185a: 3e-51 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
