ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5199 (MI0018231)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTCATACGGTTGATAGCAC miRNA* GCTATCAATTGTTTGAACAAA mismatches: 1 bulges: 0 |
pre-miRNA
ATACTTAAAACGCTTAGAGATGGGCAAAGTGCTATCAATTGTTTGAACAAACTTTGCCCAGTCTACGACATTGACTCGAACCTGATTGCTGAGTTTGTTC
ATACGGTTGATAGCACTTAGCCCATCTCTAAACAGTTTACGTAT
dot-bracket secondary structure
((((.((((..(.((((((((((((.((((((((((((((((.(((((((((((.((.(((..(.(((.......))))..)))...)).))))))))))
).)))))))))))))))).)))))))))))).)..)))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
ATACTTAAAACGCTTAGAGATGGGCAAAGTGCTATCAATTGTTTGAACAAACTTTGCCCAGTCTACGACATTGACTCGAACCTGATTGCTGAGTTTGTTC
ATACGGTTGATAGCACTTAGCCCATCTCTAAACAGTTTACGTAT
dot-bracket secondary structure
((((.((((..(.((((((((((((.((((((((((((((((.(((((((((((.((.(((..(.(((.......))))..)))...)).))))))))))
).)))))))))))))))).)))))))))))).)..)))).))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
