ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5202 (MI0018234)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACGTGAGTTAAATCGTCGA miRNA* GACGATTTAACTCACGTAACA mismatches: 0 bulges: 0 |
pre-miRNA
GTCGACGATTTAACTCACGTAACATAAGTTTGAACTCACAAAAAGTATATCATTATGTTACGTGAGTTCAAACTTATGTTACGTGAGTTAAATCGTCGAT
dot-bracket secondary structure
(((((((((((((((((((((((((((((((((((((((.....(((......))).....)))))))))))))))))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
GTCGACGATTTAACTCACGTAACATAAGTTTGAACTCACAAAAAGTATATCATTATGTTACGTGAGTTCAAACTTATGTTACGTGAGTTAAATCGTCGAT
dot-bracket secondary structure
(((((((((((((((((((((((((((((((((((((((.....(((......))).....)))))))))))))))))))))))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
