ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR159
source: miRBase, original name: far-MIR159 (MI0016603)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTATCATTCCAATGA mismatches: 5 bulges: 0 |
pre-miRNA
GTTTGGTTTTGAGGTGGAGCTCCTATCATTCCAATGAAAGGTCTTGCTAGGAGGGGTGGTACAGCTGCTCGTTCATGGTTCCCACTATCCTACCTCCGTT
TGAAACCAGGGAGATAGGCCTGTGGCTAGCATGACCGAGGAGCCGCATCGTCCCCTCGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCTTGGCCT
dot-bracket secondary structure
....((((..((.(..((((((((.(((.(((((.((..((((..((...((((((((((.(.(((.((((.(((((.(..((((...((((.((((.(.
.......).)))).))))...))))..).))))).)))).))).).)))).)))))))).))))..)).))))).))).))))))))..).))..)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
GTTTGGTTTTGAGGTGGAGCTCCTATCATTCCAATGAAAGGTCTTGCTAGGAGGGGTGGTACAGCTGCTCGTTCATGGTTCCCACTATCCTACCTCCGTT
TGAAACCAGGGAGATAGGCCTGTGGCTAGCATGACCGAGGAGCCGCATCGTCCCCTCGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCTTGGCCT
dot-bracket secondary structure
....((((..((.(..((((((((.(((.(((((.((..((((..((...((((((((((.(.(((.((((.(((((.(..((((...((((.((((.(.
.......).)))).))))...))))..).))))).)))).))).).)))).)))))))).))))..)).))))).))).))))))))..).))..)))).
SIMILARITIES| miRBase tae-MIR159a: 9e-37 PMRD sar-miR159: 1e-91 microPC miR319: 1e-91 | UniProt no hits RFAM MIR159: 6e-26 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
