ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR160
source: miRBase, original name: far-MIR160 (MI0016604)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCTCCCTGTATGCCACACATG mismatches: 11 bulges: 0 |
pre-miRNA
TTGTTGCTGATGGGGACATGACCTTCGCATGCCTGTCTCAGCTCGTCGTGCATGCCTGGCTCCCTGTATGCCACACATGTCCTAGTGGTTTGCTGGTTGG
CTGGTGTGTTGAGGGTTCAGAACAATCCATTAGTCAGTTGGAATTTGT
dot-bracket secondary structure
...(((((((((((....(((((((((((((((.((((((((.......(((((..((((.........))))..)))))((....))...)))))..))
).)))))).)))))).)))......)))))))).)))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
TTGTTGCTGATGGGGACATGACCTTCGCATGCCTGTCTCAGCTCGTCGTGCATGCCTGGCTCCCTGTATGCCACACATGTCCTAGTGGTTTGCTGGTTGG
CTGGTGTGTTGAGGGTTCAGAACAATCCATTAGTCAGTTGGAATTTGT
dot-bracket secondary structure
...(((((((((((....(((((((((((((((.((((((((.......(((((..((((.........))))..)))))((....))...)))))..))
).)))))).)))))).)))......)))))))).)))...........
SIMILARITIES| miRBase zma-MIR160g: 0.000000002 PMRD zma-miR160a: 0.000000002 microPC miR160: 0.000000008 | UniProt no hits RFAM mir-160: 0.0000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
