ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR164_2
source: miRBase, original name: far-MIR164b (MI0016617)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACTTGCT miRNA* mismatches: 10 bulges: 21 |
pre-miRNA
GGTAGCTGCTGTTGTTGCTGGCACTGTTATTATTGAAGCTGGAGAAGCAGGGCACTTGCTCAAGTGCAGTGGCGGCAGAGGTGGAGTTCATGGTGGCATG
GA
dot-bracket secondary structure
....(((.(((((((..(((.((((............(((.....))).((((....)))).)))))))..))))))).)))....((((((....))))
))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
GGTAGCTGCTGTTGTTGCTGGCACTGTTATTATTGAAGCTGGAGAAGCAGGGCACTTGCTCAAGTGCAGTGGCGGCAGAGGTGGAGTTCATGGTGGCATG
GA
dot-bracket secondary structure
....(((.(((((((..(((.((((............(((.....))).((((....)))).)))))))..))))))).)))....((((((....))))
))
SIMILARITIES| miRBase far-MIR164a: 4e-53 PMRD sbi-miR164b: 0.0003 microPC no hits | UniProt no hits RFAM no hits |
Identical with: far-MIR164a from miRBase (MNEST041870) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
