ABOUT THIS RECORDspecies: Festuca arundinacea
source: miRBase, original name: far-MIR166 (MI0016616)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGGACCAGGCTTCATCCCAG miRNA* GCGCAGCTATACCCGCGCAACCATGCGAGATGGCAATGAT mismatches: 7 bulges: 4 |
pre-miRNA
TTTCGGCAACTTTGGCAGGCTCCATGCCTACGAGGCCGCAAGCTCGCGCAGCTATACCCGCGCAACCATGCGAGATGGCAATGATTCCAATGGAATCCGG
ACCAGGCTTCATCCCAGGCATTTGGCCTCGTGCC
dot-bracket secondary structure
....(((......(((((....).)))).(((((((((...(((.((((..........))))....(((.(((.((((...((((((...))))))..)
.)))..))))))....)))...))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
TTTCGGCAACTTTGGCAGGCTCCATGCCTACGAGGCCGCAAGCTCGCGCAGCTATACCCGCGCAACCATGCGAGATGGCAATGATTCCAATGGAATCCGG
ACCAGGCTTCATCCCAGGCATTTGGCCTCGTGCC
dot-bracket secondary structure
....(((......(((((....).)))).(((((((((...(((.((((..........))))....(((.(((.((((...((((((...))))))..)
.)))..))))))....)))...))))))))))))
SIMILARITIES| miRBase pta-MIR166c: 0.0000000001 PMRD pta-miR166c: 0.0000000001 microPC no hits | UniProt sp|Q5QMZ9|HOX29_ORYSJ: 3e-17 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
