ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR171
source: miRBase, original name: far-MIR171 (MI0016605)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCATGGTTCAATCAAC mismatches: 0 bulges: 0 |
pre-miRNA
GAGTGCGATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGATCTGATTGAGCCG
TGCCAATATCGCAAGCTTCCTGCCTAGCCC
dot-bracket secondary structure
...((((((((((((((((((((((((...((((((..(.....((((.(((.((.((....)).)).)))))))....)..)))))).)))))))))))
))))))))))))).(((........)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
GAGTGCGATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGATCTGATTGAGCCG
TGCCAATATCGCAAGCTTCCTGCCTAGCCC
dot-bracket secondary structure
...((((((((((((((((((((((((...((((((..(.....((((.(((.((.((....)).)).)))))))....)..)))))).)))))))))))
))))))))))))).(((........)))..
SIMILARITIES| miRBase bdi-MIR171b: 0.000000000007 PMRD sbi-miR171a: 0.000000007 microPC miR171: 3e-54 | UniProt no hits RFAM MIR171_1: 0.0000001 |
Identical with: miR171 from microPC (MNEST044910) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
