ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR396
source: miRBase, original name: far-MIR396 (MI0016610)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAACTG miRNA* GTTCAAGAAAGTCCTTGGAAA mismatches: 2 bulges: 0 |
pre-miRNA
GCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGCGCGCGTGCGCCGCCGGCCTGCTACTTCTCGCTTCGATCTTGTCTGCCTAGCTTGTTCA
TGGTTCAAGAAAGTCCTTGGAAAACATGCCCGCCTCTCTCCTCTTCCTCCGGCAATTCCACACGGATCCA
dot-bracket secondary structure
((((.((((...((((..((((((((((((((((((((..((((....)))).((.(((..((....((.......))....))..)))..))..)))))
)))))))))))))))..))))...)))).))))..............((((...........))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
GCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGCGCGCGTGCGCCGCCGGCCTGCTACTTCTCGCTTCGATCTTGTCTGCCTAGCTTGTTCA
TGGTTCAAGAAAGTCCTTGGAAAACATGCCCGCCTCTCTCCTCTTCCTCCGGCAATTCCACACGGATCCA
dot-bracket secondary structure
((((.((((...((((..((((((((((((((((((((..((((....)))).((.(((..((....((.......))....))..)))..))..)))))
)))))))))))))))..))))...)))).))))..............((((...........))))....
SIMILARITIES| miRBase bdi-MIR396a: 4e-17 PMRD far-miR396: 4e-23 microPC miR396: 4e-57 | UniProt no hits RFAM MIR396: 0.00000000000004 |
Identical with: miR396 from microPC (MNEST044798) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
