ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR437
source: miRBase, original name: far-MIR437 (MI0016613)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAACATAGAGAAGTTTGACTT miRNA* TCAAACATAGAGAAGTTTGA mismatches: 9 bulges: 0 |
pre-miRNA
ATGTTGTAAATACTGACAGTTTTTACAAAAAAATCTGGTCAAACATAGAGAAGTTTGACTTAGGACAAAACTAGAACTTCAATTATTTTGGAACGGATGG
AGTATTCACCAACATAATGACACCCTTCCGCACTCCTTAATATGGCCTTGAAGTCTAAAC
dot-bracket secondary structure
...(((((((.((.....)).))))))).....(((((((((((........))))))).)))).......((((.((((((.((((..(((.((((.((
.((..(((.........))).)))).))))...)))..)))).....))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
ATGTTGTAAATACTGACAGTTTTTACAAAAAAATCTGGTCAAACATAGAGAAGTTTGACTTAGGACAAAACTAGAACTTCAATTATTTTGGAACGGATGG
AGTATTCACCAACATAATGACACCCTTCCGCACTCCTTAATATGGCCTTGAAGTCTAAAC
dot-bracket secondary structure
...(((((((.((.....)).))))))).....(((((((((((........))))))).)))).......((((.((((((.((((..(((.((((.((
.((..(((.........))).)))).))))...)))..)))).....))))))))))...
SIMILARITIES| miRBase osa-MIR437: 0.0000000005 PMRD osa-miR437: 0.0000000005 microPC miR1439: 0.0005 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
