ABOUT THIS RECORDspecies: Festuca arundinacea
source: miRBase, original name: far-MIR529 (MI0016614)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAAGAGAGAGAGCACAGCTT miRNA* GCTGAGTACTTGACAGAAGAG mismatches: 11 bulges: 1 |
pre-miRNA
TGGTCGTGGCTGGCACCGTGGGTGGTGGTATCCCATGGCTGAGTACTTGACAGAAGAGAGAGAGCACAGCTTGAGTCGGCGGCGACCCCTGTGAGACACC
CGCCTGGAGGGAGCTCTGGA
dot-bracket secondary structure
.((((((.((((((..((((((.........))))))((((.((.(((..(......).))).)).))))....)))))).))))))((...(((.(.((
(.......))).)))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
TGGTCGTGGCTGGCACCGTGGGTGGTGGTATCCCATGGCTGAGTACTTGACAGAAGAGAGAGAGCACAGCTTGAGTCGGCGGCGACCCCTGTGAGACACC
CGCCTGGAGGGAGCTCTGGA
dot-bracket secondary structure
.((((((.((((((..((((((.........))))))((((.((.(((..(......).))).)).))))....)))))).))))))((...(((.(.((
(.......))).)))).)).
SIMILARITIES| miRBase far-MIR156b: 1e-50 PMRD bdi-miR156: 0.0000000000001 microPC miR157: 0.00002 | UniProt no hits RFAM mir-156: 0.0004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
