ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR1119
source: miRBase, original name: far-MIR1119 (MI0016606)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCACGGCGTGATGCTTAGTCAG miRNA* AGTGAGCTCGCGAGCGCGGAGGAGCTGGCTCAGCGGCTCAGCGCCTCATGCCAGCCGTGCCACG mismatches: 2 bulges: 43 |
pre-miRNA
CCAGCGAGTGAGCTCGCGAGCGCGGAGGAGCTGGCTCAGCGGCTCAGCGCCTCATGCCAGCCGTGCCACGGTGGCAGTCGGTCGTGTGTACTCCTACGTG
GCACGGCGTGATGCTTAGTCAGCCAGCAGAGTGGAGTGCTACTTTT
dot-bracket secondary structure
...((((.(((((((((..(.(((((((.(((((((....))).)))).)))).)))).(((((((((((..((.(((((......)).)))))..))))
))))))))))).))))).)).))....(((((((....))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
CCAGCGAGTGAGCTCGCGAGCGCGGAGGAGCTGGCTCAGCGGCTCAGCGCCTCATGCCAGCCGTGCCACGGTGGCAGTCGGTCGTGTGTACTCCTACGTG
GCACGGCGTGATGCTTAGTCAGCCAGCAGAGTGGAGTGCTACTTTT
dot-bracket secondary structure
...((((.(((((((((..(.(((((((.(((((((....))).)))).)))).)))).(((((((((((..((.(((((......)).)))))..))))
))))))))))).))))).)).))....(((((((....))))))).
SIMILARITIES| miRBase tae-MIR1119: 0.000000000002 PMRD tae-miR1119: 0.000000000002 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
