ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR1122
source: miRBase, original name: far-MIR1122 (MI0016607)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCGTATCTAGA miRNA* TAGATTCAGATGTATCTAAA mismatches: 2 bulges: 0 |
pre-miRNA
TCTAAAGAAGTTATTCGCTACAAGTTAACAAGATGACCGGGCATTGTACACTCAATGACCTCACAATAAGCACCATTTCATCAAAAAATTACTACTACCT
CCGTCTAAAAATAAGTGTCTTAGTTTTGTCTAGATTCAGATGTATCTAAACATATTTTAGTTGTAGATACATCCGTATCTAGAAAAAGTTGAGACACTTA
TTTTTGTACGGAGGGAGTAGAATATTTGTTATGAAACCCAGGACATGAGTTGTTATCATACAATCTTGTGGTACATGAAGAGATAACAAAACGAAGAAGT
dot-bracket secondary structure
.........((((((..((.((.((..(((((((..((.(((((((......))))).))...............((((((..(((.(((.(((((.(((
((((.(((((((((((((((((..(((.(((((((.(.(((((((((((((........))).)))))))))).).))))))).)))..)))))))))))
)))))).))))))).)))))))).)))...))))))....))..((((.......))))...)))))))...)).)).)).)))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
TCTAAAGAAGTTATTCGCTACAAGTTAACAAGATGACCGGGCATTGTACACTCAATGACCTCACAATAAGCACCATTTCATCAAAAAATTACTACTACCT
CCGTCTAAAAATAAGTGTCTTAGTTTTGTCTAGATTCAGATGTATCTAAACATATTTTAGTTGTAGATACATCCGTATCTAGAAAAAGTTGAGACACTTA
TTTTTGTACGGAGGGAGTAGAATATTTGTTATGAAACCCAGGACATGAGTTGTTATCATACAATCTTGTGGTACATGAAGAGATAACAAAACGAAGAAGT
dot-bracket secondary structure
.........((((((..((.((.((..(((((((..((.(((((((......))))).))...............((((((..(((.(((.(((((.(((
((((.(((((((((((((((((..(((.(((((((.(.(((((((((((((........))).)))))))))).).))))))).)))..)))))))))))
)))))).))))))).)))))))).)))...))))))....))..((((.......))))...)))))))...)).)).)).)))))).............
SIMILARITIES| miRBase tae-MIR1135: 0.0000003 PMRD tae-miR1135: 0.0000003 microPC miR1135: 0.000001 | UniProt no hits RFAM MIR1122: 0.0000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
