ABOUT THIS RECORDspecies: Festuca arundinacea
source: miRBase, original name: far-MIR1134 (MI0016608)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGACAACAACAACAAGAAGAAGAG miRNA* mismatches: 19 bulges: 73 |
pre-miRNA
ACGGCAATCCCAGCTTCAACGGGCCGGTGCCAGGCGTGCCTCCCGGCGATGCCCATCGGTCGCCGACGCCTCCTAGCACGCCAGCTGGCTCACAAGGTGT
CTCTCCCGGCGGCGACAACAACAACAAGAAGAAGAGATCAGGTCTGGTGCTGGCTACTACCATCCCGGTCTCAGTCAGTGTGGTGGCGCTCATCTCGCTG
GGTGCCGTGCTGCTCTTCCGCAAGAAAAACAACGGGTCCG
dot-bracket secondary structure
((((((..((((((.......((((((((...((((((((....))).)))))))))))))...((((((.((..((.((((.(((((..(((...))).
.....)))))))))...................((((((.((..(((((........)))))..)))))))).....))..)).)))).)).....))))
))))))))..(((......)))..........((....))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
ACGGCAATCCCAGCTTCAACGGGCCGGTGCCAGGCGTGCCTCCCGGCGATGCCCATCGGTCGCCGACGCCTCCTAGCACGCCAGCTGGCTCACAAGGTGT
CTCTCCCGGCGGCGACAACAACAACAAGAAGAAGAGATCAGGTCTGGTGCTGGCTACTACCATCCCGGTCTCAGTCAGTGTGGTGGCGCTCATCTCGCTG
GGTGCCGTGCTGCTCTTCCGCAAGAAAAACAACGGGTCCG
dot-bracket secondary structure
((((((..((((((.......((((((((...((((((((....))).)))))))))))))...((((((.((..((.((((.(((((..(((...))).
.....)))))))))...................((((((.((..(((((........)))))..)))))))).....))..)).)))).)).....))))
))))))))..(((......)))..........((....))
SIMILARITIES| miRBase tae-MIR1134: 0.0002 PMRD tae-miR1134: 0.0002 microPC no hits | UniProt sp|Q9LUL4|SRF7_ARATH: 0.0007 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
