ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR156
source: miRBase, original name: hvu-MIR156 (MI0016449)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACCCTCTCTCTGTCT mismatches: 3 bulges: 1 |
pre-miRNA
TGACAGAAGAGAGTGAGCACACAGCGGCAGGCTACGTCTGATAAGAGCATGGTTAATAGTATAGCCAACTGCTGGCTATACTATGAGCACGTGCTTAGAC
GCAGCTGCTGTTGCGTGCTCACCCTCTCTCTGTCT
dot-bracket secondary structure
.((((((((((.((((((((.(((((((((.((.(((((.....((((((((((.((((((((((((.....)))))))))))).))).)))))))))))
).))))))))))).)))))))).)))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
TGACAGAAGAGAGTGAGCACACAGCGGCAGGCTACGTCTGATAAGAGCATGGTTAATAGTATAGCCAACTGCTGGCTATACTATGAGCACGTGCTTAGAC
GCAGCTGCTGTTGCGTGCTCACCCTCTCTCTGTCT
dot-bracket secondary structure
.((((((((((.((((((((.(((((((((.((.(((((.....((((((((((.((((((((((((.....)))))))))))).))).)))))))))))
).))))))))))).)))))))).)))).)))))).
SIMILARITIES| miRBase tae-MIR156: 0.000000000000002 PMRD hvv-miR156a: 6e-40 microPC miR156: 0.0000004 | UniProt no hits RFAM mir-156: 0.0000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
