ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR159
source: miRBase, original name: hvu-MIR159b (MI0016451)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GGGCCCTCTTAGATCTAGCCA mismatches: 5 bulges: 0 |
pre-miRNA
CTGACCGCTGTTTGGATTGAAGGGAGCTCTGCATCTTGATCTATTACTAATTAGTTTCCTCTTCCTTCTGCTGCATGCAAGCCTGGAAATCATTTGTGGG
GCCCTCTTAGATCTAGCCATGG
dot-bracket secondary structure
....(((.((.(((((((.(((((.((((..((...(((.(((........))).......((((....(((.......)))..)))).)))..))..))
)).))))).))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
CTGACCGCTGTTTGGATTGAAGGGAGCTCTGCATCTTGATCTATTACTAATTAGTTTCCTCTTCCTTCTGCTGCATGCAAGCCTGGAAATCATTTGTGGG
GCCCTCTTAGATCTAGCCATGG
dot-bracket secondary structure
....(((.((.(((((((.(((((.((((..((...(((.(((........))).......((((....(((.......)))..)))).)))..))..))
)).))))).))))))).)))))
SIMILARITIES| miRBase zma-MIR159b: 0.00000000000003 PMRD hvv-miR159a: 6e-40 microPC miR159: 0.00002 | UniProt no hits RFAM MIR159: 0.0000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
