ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR166
source: miRBase, original name: hvu-MIR166 (MI0016455)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGACNCCGGGTCCNAAAGAGAGA mismatches: 3 bulges: 6 |
pre-miRNA
CATGGTTGTCGAGGGGAATGACNCCGGGTCCNAAAGAGAGACNCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCCATGACTCCAT
dot-bracket secondary structure
.((((..((((.(((((((((..((.(((((......(((((....((((.(((....))).)))))))))))))).))..))))))))).)))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
CATGGTTGTCGAGGGGAATGACNCCGGGTCCNAAAGAGAGACNCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCCATGACTCCAT
dot-bracket secondary structure
.((((..((((.(((((((((..((.(((((......(((((....((((.(((....))).)))))))))))))).))..))))))))).)))).))))
SIMILARITIES| miRBase hvu-MIR166c: 2e-33 PMRD hvv-miR166: 2e-33 microPC miR166: 2e-33 | UniProt no hits RFAM mir-166: 3e-38 |
Identical with: hvv-miR166 from PMRD (MNEST048660) |
MOREmiRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
