ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR166
source: miRBase, original name: hvu-MIR166b (MI0016742)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGTCCGAGA mismatches: 2 bulges: 0 |
pre-miRNA
GGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCC
CC
dot-bracket secondary structure
((((((((..((((((((((((((((..((((.(((.((((.....)))).(((.......)))..))).))))..))))))))))))))))..))))))
))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
[2] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
GGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCC
CC
dot-bracket secondary structure
((((((((..((((((((((((((((..((((.(((.((((.....)))).(((.......)))..))).))))..))))))))))))))))..))))))
))
SIMILARITIES| miRBase osa-MIR166c: 4e-53 PMRD osa-miR166c: 4e-53 microPC miR166: 5e-52 | UniProt no hits RFAM mir-166: 6e-52 |
Identical with: osa-miR166c from PMRD (MNEST048846) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
[2] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
