ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR166
source: miRBase, original name: hvu-MIR166c (MI0018212)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGACNCCGGGTCCNAAAGAGAGA mismatches: 3 bulges: 6 |
pre-miRNA
GGGGAATGACNCCGGGTCCNAAAGAGAGACNCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
(((((((((..((.(((((......(((((....((((.(((....))).)))))))))))))).))..)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
GGGGAATGACNCCGGGTCCNAAAGAGAGACNCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
(((((((((..((.(((((......(((((....((((.(((....))).)))))))))))))).))..)))))))))
SIMILARITIES| miRBase hvu-MIR166: 1e-33 PMRD hvv-miR166: 1e-33 microPC miR166: 1e-33 | UniProt no hits RFAM mir-166: 2e-32 |
Identical with: hvv-miR166 from PMRD (MNEST048660) |
MOREmiRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
