ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR168
source: miRBase, original name: hvu-MIR168 (MI0016457)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGATCGGGAC miRNA* CCCGCCTTGCACCAAGTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
GTCCGTCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCTCCGCCCGCCCCGACGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGC
GCAGCG
dot-bracket secondary structure
...(((.((.((((.(((.(..(((((((((((((..(((((...((((((((......)))).)))))))))..)))))))))))))..).))).))))
)).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
[2] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
GTCCGTCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCTCCGCCCGCCCCGACGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGC
GCAGCG
dot-bracket secondary structure
...(((.((.((((.(((.(..(((((((((((((..(((((...((((((((......)))).)))))))))..)))))))))))))..).))).))))
)).)))
SIMILARITIES| miRBase hvu-MIR168: 2e-55 PMRD sof-miR168a: 1e-37 microPC miR168: 1e-19 | UniProt no hits RFAM MIR168: 1e-34 |
Identical with: hvv-miR168 from PMRD (MNEST048661) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
[2] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
