ABOUT THIS RECORDspecies: Hordeum vulgare
source: miRBase, original name: hvu-MIR169 (MI0016459)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCCAAGGATGAGTTGCCTG miRNA* GGACTCATGGAGGTAGGGCTTTC mismatches: 4 bulges: 6 |
pre-miRNA
TAACACGCCAGAAATAAAGCCAAGGATGAGTTGCCTGATCATCAGGACTCATGGAGGTAGGGCTTTCTGTTTTTGGTGAGTTT
dot-bracket secondary structure
.(((.((((((((((((((((....((((((..((((.....))))))))))........)))))..))))))))))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
TAACACGCCAGAAATAAAGCCAAGGATGAGTTGCCTGATCATCAGGACTCATGGAGGTAGGGCTTTCTGTTTTTGGTGAGTTT
dot-bracket secondary structure
.(((.((((((((((((((((....((((((..((((.....))))))))))........)))))..))))))))))).))).
SIMILARITIES| miRBase tcc-MIR169i: 0.0002 PMRD ath-miR169n: 0.001 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
