ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR171
source: miRBase, original name: hvu-MIR171 (MI0016461)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCTCGACTCACTCAGA mismatches: 3 bulges: 0 |
pre-miRNA
GCGGGTTGATGGCCAGGAACTCCGACAAGAGGAGGATGCTGAAACGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCGGAGGGAGCCATCTGC
GGCGGCGGTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGCTCGTCCCTTGTCGCCATCACCCAC
dot-bracket secondary structure
..((((.((((((..((....))((((((.(((.((.(((((((.((.(((((.(((((((((.((.((((.(((((((.(((((.(((......))).)
))))..)).))))).)))).)).))))))))).))))))).))))).)))).)))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
[2] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
[3] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
GCGGGTTGATGGCCAGGAACTCCGACAAGAGGAGGATGCTGAAACGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCGGAGGGAGCCATCTGC
GGCGGCGGTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGCTCGTCCCTTGTCGCCATCACCCAC
dot-bracket secondary structure
..((((.((((((..((....))((((((.(((.((.(((((((.((.(((((.(((((((((.((.((((.(((((((.(((((.(((......))).)
))))..)).))))).)))).)).))))))))).))))))).))))).)))).)))))))))))))))))))..
SIMILARITIES| miRBase tae-MIR171a: 0.000000000000002 PMRD hvv-miR171: 1e-38 microPC miR171: 1e-38 | UniProt no hits RFAM MIR171_1: 0.000000000003 |
Identical with: miR171 from microPC (MNEST046135) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
[2] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
[3] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
