ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR397
source: miRBase, original name: hvu-MIR397 (MI0016465)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGTTGAGTGCAGCGTTGATG miRNA* CCGGCGCTGCACGCAATGACG mismatches: 3 bulges: 0 |
pre-miRNA
CGCAGAGGTGCCGTTGAGTGCAGCGTTGATGAACCGTCCGGCCATGGCCCGTCCGCCTCCACCGAGGCCGGAGCGGTTCACCGGCGCTGCACGCAATGAC
GCCTCTGCTTTCT
dot-bracket secondary structure
.(((((((((.(((((.(((((((((((.((((((((((((((.(((..............))).))))))).))))))).))))))))))).))))).)
)))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
CGCAGAGGTGCCGTTGAGTGCAGCGTTGATGAACCGTCCGGCCATGGCCCGTCCGCCTCCACCGAGGCCGGAGCGGTTCACCGGCGCTGCACGCAATGAC
GCCTCTGCTTTCT
dot-bracket secondary structure
.(((((((((.(((((.(((((((((((.((((((((((((((.(((..............))).))))))).))))))).))))))))))).))))).)
)))))))).....
SIMILARITIES| miRBase osa-MIR397b: 0.00002 PMRD tae-miR2029: 0.0000000000004 microPC miR397: 0.0003 | UniProt no hits RFAM MIR397: 0.0004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
