ABOUT THIS RECORDspecies: Hordeum vulgare
source: miRBase, original name: hvu-MIR399 (MI0017933)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCCG miRNA* AGGTAGATTTGCCAAAGGAGA mismatches: 6 bulges: 2 |
pre-miRNA
TCAGAAGAACTAGGTAGATTTGCCAAAGGAGATTTGCCGAACTATAGGTACTGTAGGTAGGTTTTGCCAAAAGGAGATTTGCCCCGAACTATCGGTAGGT
TTGCCAAAGGAGATTTGCCCCGAAGAACTTA
dot-bracket secondary structure
............(((((((((.((...(((((((((((((..(((((...)))))((((((((...((....)).))))))))........)))))))))
)).))...)))))))))))............
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
TCAGAAGAACTAGGTAGATTTGCCAAAGGAGATTTGCCGAACTATAGGTACTGTAGGTAGGTTTTGCCAAAAGGAGATTTGCCCCGAACTATCGGTAGGT
TTGCCAAAGGAGATTTGCCCCGAAGAACTTA
dot-bracket secondary structure
............(((((((((.((...(((((((((((((..(((((...)))))((((((((...((....)).))))))))........)))))))))
)).))...)))))))))))............
SIMILARITIES| miRBase mtr-MIR399i: 0.000006 PMRD mtr-miR399c: 0.000006 microPC miR399: 0.0001 | UniProt no hits RFAM mir-399: 0.0001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
