ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR444
source: miRBase, original name: hvu-MIR444a (MI0016745)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTGCCTCAAGCTTGCTGC miRNA* ACAAGTAGGACACCAACA mismatches: 1 bulges: 5 |
pre-miRNA
AGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCT
CAAGCTTGCTGCCT
dot-bracket secondary structure
(((((((((((((.((.((((((.((.((((((.(((.(((((......................))))).))).)))))).)).))...)))).)))))
...))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
[2] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
AGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCT
CAAGCTTGCTGCCT
dot-bracket secondary structure
(((((((((((((.((.((((((.((.((((((.(((.(((((......................))))).))).)))))).)).))...)))).)))))
...))))).)))))
SIMILARITIES| miRBase tae-MIR444: 3e-41 PMRD tae-miR444: 3e-41 microPC miR444: 4e-59 | UniProt no hits RFAM MIR444: 5e-59 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
[2] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
