ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR444
source: miRBase, original name: hvu-MIR444b (MI0017934)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGCTGTCTCAAGCTT miRNA* GCATGAGGCAACAACTGCATT mismatches: 2 bulges: 0 |
pre-miRNA
GGTGGCACCAAGCATGAGGCAACAACTGCATTACTTTCAAGGAAGTTACAAAATCTATGGGTCTTCATAATCGTGACTTTCTTGCAAGTTGTGCAGTTGC
TGTCTCAAGCTTGCTGACTCC
dot-bracket secondary structure
((.(.((.(((((.(((((((.(((((((((.((((.((((((((((((......(((((....)))))...)))))))))))).)))).))))))))).
))))))).))))).)).).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
GGTGGCACCAAGCATGAGGCAACAACTGCATTACTTTCAAGGAAGTTACAAAATCTATGGGTCTTCATAATCGTGACTTTCTTGCAAGTTGTGCAGTTGC
TGTCTCAAGCTTGCTGACTCC
dot-bracket secondary structure
((.(.((.(((((.(((((((.(((((((((.((((.((((((((((((......(((((....)))))...)))))))))))).)))).))))))))).
))))))).))))).)).).))
SIMILARITIES| miRBase osa-MIR444d: 5e-22 PMRD tae-miR2024a: 4e-53 microPC miR444: 1e-53 | UniProt no hits RFAM MIR444: 0.000000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
