ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRBase, original name: hvu-MIR1120 (MI0016741)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATTCTTATATTATGGGACGGAG miRNA* TCCTTCCCATATATAAGAGTGTTT mismatches: 1 bulges: 2 |
pre-miRNA
CTACTCCCTCCTTCCCATATATAAGAGTGTTTTTAATACTACACTAGTGTGAAAAACATTCTTATATTATGGGACGGAGGAGTT
dot-bracket secondary structure
..(((((.(((.((((((((((((((((((((((.((((((...)))))).))))))))))))))).))))))).)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
CTACTCCCTCCTTCCCATATATAAGAGTGTTTTTAATACTACACTAGTGTGAAAAACATTCTTATATTATGGGACGGAGGAGTT
dot-bracket secondary structure
..(((((.(((.((((((((((((((((((((((.((((((...)))))).))))))))))))))).))))))).)))))))).
SIMILARITIES| miRBase tae-MIR1120: 0.000000004 PMRD tae-miR1120: 0.000000004 microPC miR1120: 0.00000002 | UniProt no hits RFAM MIR1122: 5e-18 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
