ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR5067
source: miRBase, original name: hvu-MIR5049 (MI0017936)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTAAATACTTGTTGTTGGG miRNA* CAACAACAAGTATTGTGGTAC mismatches: 4 bulges: 0 |
pre-miRNA
ACTCCCTCTGTTCCTAAATACTTGTTGTTGGGGAGAACTAGACTAGTTTTCTGCAACAACAAGTATTGTGGTACGGAGGGAGT
dot-bracket secondary structure
(((((((((((.((..((((((((((((((.(((((((((...))))))))).))))))))))))))..)).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
ACTCCCTCTGTTCCTAAATACTTGTTGTTGGGGAGAACTAGACTAGTTTTCTGCAACAACAAGTATTGTGGTACGGAGGGAGT
dot-bracket secondary structure
(((((((((((.((..((((((((((((((.(((((((((...))))))))).))))))))))))))..)).)))))))))))
SIMILARITIES| miRBase tae-MIR1122: 0.00002 PMRD tae-miR1122: 0.00002 microPC no hits | UniProt no hits RFAM MIR1122: 5e-24 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
