ABOUT THIS RECORDspecies: Hordeum vulgare
source: miRBase, original name: hvu-MIR5050 (MI0017937)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGGTCGTTCAACCAGCAA miRNA* TGCCGGTTGAACGACCTCACCA mismatches: 2 bulges: 1 |
pre-miRNA
GCTGGTGTTTTTGCCGGTTGAACGACCTCACCATGTCGACCGCCTCTTCCTTGACAGGTATCAGGAAGAAAAGATCTGCTCGTGCCATGTTGAGGTCGTT
CAACCAGCAAAACGGCGGC
dot-bracket secondary structure
((((.((((((.((.(((((((((((((((.((((..((.(...(((((((.((......)))))))))...).)).((....)))))).))))))))))
))))).)))))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
GCTGGTGTTTTTGCCGGTTGAACGACCTCACCATGTCGACCGCCTCTTCCTTGACAGGTATCAGGAAGAAAAGATCTGCTCGTGCCATGTTGAGGTCGTT
CAACCAGCAAAACGGCGGC
dot-bracket secondary structure
((((.((((((.((.(((((((((((((((.((((..((.(...(((((((.((......)))))))))...).)).((....)))))).))))))))))
))))).)))))))).))))
SIMILARITIES| miRBase no hits PMRD tae-miR2023b: 8e-30 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
