ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: miRBase, original name: osa-MIR156b (MI0000654)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTCTCTATCTGTCAGC mismatches: 0 bulges: 1 |
pre-miRNA
TTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGA
GCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAG
dot-bracket secondary structure
.((((((((((((((.(((((((....(((((..(((.((.(((((((((((((((((((((.((((((....(((((((((((....).))))))))))
)))))).))))))))))))).)))))))))).....))).)))))....))))..))).))))))))))..)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
TTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGA
GCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAG
dot-bracket secondary structure
.((((((((((((((.(((((((....(((((..(((.((.(((((((((((((((((((((.((((((....(((((((((((....).))))))))))
)))))).))))))))))))).)))))))))).....))).)))))....))))..))).))))))))))..)))).
SIMILARITIES| miRBase ssp-MIR156: 8e-34 PMRD osa-miR156b: 4e-97 microPC miR156: 2e-43 | UniProt no hits RFAM mir-156: 3e-43 |
Identical with: miR156 from microPC (MNEST045399) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
