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ABOUT THIS RECORD
ID:
MNEST041907
species:
Oryza sativa
miRNA family:
MIR156
source:
miRBase, original name:
osa-MIR156d
(
MI0000656
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC
miRNA*
GCTCACTCCTCTTTCTGTCACC
mismatches:
0
bulges:
2
View larger
pre-miRNA
GGAGAAGCTCTCATGAGAT
TGACAGAAGAGAGTGAGCAC
ACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGT
GCTCACTCCTCTTTCTG
TCACC
CTCTTTCTCTCAGGGCTCAACTCC
dot-bracket secondary structure
((((.((((((...((((.
((((((((((((((((((((
.(((((....((.(((.(((.....))).))).)).))))).))
))))))).))).)))))
)))..
.....))))..))))))...))))
SIMILARITIES
miRBase
bdi-MIR156c
:
9e-33
PMRD
osa-miR156d
:
3e-69
microPC
miR156
:
2e-18
UniProt
no hits
RFAM
mir-156: 3e-42
Identical with:
osa-miR156d
from PMRD (
MNEST048804
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP,
Genes Dev. 16:1616-1626(2002).
,
"MicroRNAs in plants"