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ABOUT THIS RECORD
ID:
MNEST041908
species:
Oryza sativa
miRNA family:
MIR156
source:
miRBase, original name:
osa-MIR156e
(
MI0000657
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC
miRNA*
GCTCACTGCTCTTTCTGTCATC
mismatches:
0
bulges:
2
View larger
pre-miRNA
GGCGCGAGG
TGACAGAAGAGAGTGAGCAC
ACGGCCGGGCGTGACGGCACCGGCGGGCGTGCCGTCGCGGCCGCGT
GCTCACTGCTCTTTCTGTCATC
CGG
TGCC
dot-bracket secondary structure
(((((..((
((((((((((((((((((((
.(((((....(((((((((((.....).))))))))))))))).))
))))))).))).))))))))))
..)
))))
SIMILARITIES
miRBase
osa-MIR156i
:
4e-34
PMRD
osa-miR156e
:
2e-54
microPC
miR156
:
0.0000003
UniProt
no hits
RFAM
mir-156: 1e-31
Identical with:
osa-miR156e
from PMRD (
MNEST048805
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP,
Genes Dev. 16:1616-1626(2002).
,
"MicroRNAs in plants"