ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: miRBase, original name: osa-MIR156f (MI0000658)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTTCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
AGTTGACAGAAGAGAGTGAGCACACAGCGGCCAGACTGCATCGATCTATCAATCTTCCCTTCGACAGGATAGCTAGATAGAAAGAAAGAGAGGCCGTCGG
CGGCCATGGAAGAGAGAGAGAGAGAGAGATGAAATGATGATGATGATACAGCTGCCGCTGCGTGCTCACTTCTCTTTCTGTCAGCT
dot-bracket secondary structure
(((((((((((((((((((((((.(((((((.((.(((((((..(((.((..((((((.(((....)))......................(((((....
)))))..))))))..)).....)))..))))..((.((....)).)).)))))))))))).)))))))).)))).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
AGTTGACAGAAGAGAGTGAGCACACAGCGGCCAGACTGCATCGATCTATCAATCTTCCCTTCGACAGGATAGCTAGATAGAAAGAAAGAGAGGCCGTCGG
CGGCCATGGAAGAGAGAGAGAGAGAGAGATGAAATGATGATGATGATACAGCTGCCGCTGCGTGCTCACTTCTCTTTCTGTCAGCT
dot-bracket secondary structure
(((((((((((((((((((((((.(((((((.((.(((((((..(((.((..((((((.(((....)))......................(((((....
)))))..))))))..)).....)))..))))..((.((....)).)).)))))))))))).)))))))).)))).)))))))))))
SIMILARITIES| miRBase sbi-MIR156i: 7e-16 PMRD osa-miR156f: 5e-69 microPC miR156: 0.0000006 | UniProt no hits RFAM mir-156: 0.00000000000001 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
