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ABOUT THIS RECORD
ID:
MNEST041913
species:
Oryza sativa
miRNA family:
MIR156
source:
miRBase, original name:
osa-MIR156j
(
MI0000662
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC
miRNA*
GCTCGCTCCTCTTTCTGTCAGC
mismatches:
0
bulges:
2
View larger
pre-miRNA
TTGGGGCGGGGCGGGATCGAGCATATGAAAGGCGAGATTGT
TGACAGAAGAGAGTGAGCAC
ACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCC
GCCGCGT
GCTCGCTCCTCTTTCTGTCAGC
ATCTCTCATCACTCCCTCCCGCATCCCCCGCCCCGA
dot-bracket secondary structure
((((((((((((((((..(((...((((.....(((((.((
((((((((((((((((((((
.(((((.((.(((.((.((((.....)))).))))))))
)))).))
))))))).))).))))))))))
)))))))))..)))..))))))....))))))))))
SIMILARITIES
miRBase
osa-MIR156h
:
2e-52
PMRD
osa-miR156j
:
2e-90
microPC
miR156
:
8e-40
UniProt
no hits
RFAM
mir-156: 2e-43
Identical with:
osa-miR156m
from PMRD (
MNEST048813
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP,
Genes Dev. 16:1616-1626(2002).
,
"MicroRNAs in plants"