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ABOUT THIS RECORD
ID:
MNEST041914
species:
Oryza sativa
miRNA family:
MIR156
source:
miRBase, original name:
osa-MIR156k
(
MI0001090
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCACA
miRNA*
TGCTCTCTGATCTATCTGTCATT
mismatches:
1
bulges:
2
View larger
pre-miRNA
TTGAGAGTGA
TGACAGAAGAGAGAGAGCACA
ACCCGGCAGCAGCGACGACGGCGGTCGCTTCTGCCAGGGCCGTG
TGCTCTCTGATCTATCTGTCATT
GC
CGTCCA
dot-bracket secondary structure
..((..(..(
((((((((((.((((((((((
.((((((((.((((((.......)))))).))))).)))...))
))))))))..))).)))))))).
.)
..))..
SIMILARITIES
miRBase
sbi-MIR156d
:
2e-17
PMRD
osa-miR156k
:
2e-55
microPC
miR156
:
0.00000008
UniProt
no hits
RFAM
mir-156: 1e-43
Identical with:
osa-miR156k
from PMRD (
MNEST048811
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Jones-Rhoades MW, Bartel DP,
Mol Cell. 14:787-799(2004).
,
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"