ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: miRBase, original name: osa-MIR156l (MI0001091)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGACAGAAGAGAGTGAGCATA miRNA* TGCTCACTTCTCTTTCTGTCAGC mismatches: 1 bulges: 2 |
pre-miRNA
GCTAGGGAGCCGACAGAAGAGAGTGAGCATATATAGTTCTTTCCTTGCATATGTGGTCATATGTGTGTTGACTGAAGAGATACATATATATAGAGAGAGA
GAGTTCATGTGCTTGAAGCTATATGTGCTCACTTCTCTTTCTGTCAGCAAATTATC
dot-bracket secondary structure
........((.((((((((((((((((((((((((((...(((...(((((((.(.(((((((((((((.........)))))))))))...........
)).).)))))))..)))))))))))))))))).)))).))))))).))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GCTAGGGAGCCGACAGAAGAGAGTGAGCATATATAGTTCTTTCCTTGCATATGTGGTCATATGTGTGTTGACTGAAGAGATACATATATATAGAGAGAGA
GAGTTCATGTGCTTGAAGCTATATGTGCTCACTTCTCTTTCTGTCAGCAAATTATC
dot-bracket secondary structure
........((.((((((((((((((((((((((((((...(((...(((((((.(.(((((((((((((.........)))))))))))...........
)).).)))))))..)))))))))))))))))).)))).))))))).))........
SIMILARITIES| miRBase osa-MIR156c: 0.0000000001 PMRD osa-miR156l: 1e-63 microPC miR156: 0.000008 | UniProt no hits RFAM mir-156: 4e-17 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
